Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phenylalanine--trna ligase subunit beta | DD563_08175 | Not Available | Positive | 1668864 - 1671263 | 85112.0 |
| hypothetical protein | DD563_08180 | Not Available | Positive | 1671281 - 1671727 | 16203.2 |
| glutathione s-transferase | DD563_08185 | Not Available | Negative | 1671937 - 1672635 | 25421.7 |
| large conductance mechanosensitive channel protein mscl | DD563_08190 | Not Available | Positive | 1672781 - 1673191 | 14539.1 |
| molecular chaperone dnak | DD563_08195 | Not Available | Positive | 1673688 - 1675601 | 68668.1 |
| molecular chaperone dnaj | DD563_08200 | Not Available | Positive | 1675677 - 1676819 | 40346.6 |
| cell filamentation protein fic | DD563_08205 | Not Available | Positive | 1677158 - 1677757 | 22646.8 |
| atpase | DD563_08210 | Not Available | Positive | 1677888 - 1678697 | 29694.8 |
| eama family transporter | DD563_08215 | Not Available | Negative | 1678657 - 1679550 | 31164.4 |
| glucokinase | DD563_08220 | Not Available | Positive | 1679648 - 1680553 | 31971.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
