Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sodium-dependent bicarbonate transport family permease | DD563_08125 | Not Available | Positive | 1661412 - 1662464 | 35905.9 |
| 50s ribosomal protein l35 | DD563_08130 | Not Available | Positive | 1662597 - 1662797 | 7326.22 |
| 50s ribosomal protein l20 | DD563_08135 | Not Available | Positive | 1662812 - 1663177 | 13399.2 |
| glycosyl transferase | DD563_08140 | Not Available | Positive | 1663432 - 1664211 | 29658.1 |
| glycosyltransferase family 2 protein | DD563_08145 | Not Available | Positive | 1664201 - 1665055 | 30715.8 |
| hypothetical protein | DD563_08150 | Not Available | Positive | 1665239 - 1665745 | 18348.9 |
| fatty acid desaturase | DD563_08155 | Not Available | Positive | 1665806 - 1666729 | 34633.3 |
| hypothetical protein | DD563_08160 | Not Available | Negative | 1666696 - 1666968 | 9380.31 |
| phenylalanine--trna ligase subunit alpha | DD563_08165 | Not Available | Positive | 1667167 - 1668240 | 40161.8 |
| blue light sensor protein | DD563_08170 | Not Available | Positive | 1668346 - 1668756 | 15338.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
