Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DD563_08075 | Not Available | Negative | 1653694 - 1653966 | 9758.04 |
| duf1611 domain-containing protein | DD563_08080 | Not Available | Positive | 1654188 - 1655189 | 35624.1 |
| dipeptide epimerase | DD563_08085 | Not Available | Positive | 1655270 - 1656235 | 34172.3 |
| d-amino acid aminotransferase | DD563_08090 | Not Available | Positive | 1656270 - 1657130 | 31264.5 |
| duf1244 domain-containing protein | DD563_08095 | Not Available | Negative | 1657143 - 1657454 | 11943.1 |
| 5-carboxymethyl-2-hydroxymuconate isomerase | DD563_08100 | Not Available | Negative | 1657486 - 1657824 | 12148.9 |
| n-formylglutamate amidohydrolase | DD563_08105 | Not Available | Negative | 1657838 - 1658572 | 26648.7 |
| pyruvate kinase | DD563_08110 | Not Available | Positive | 1658713 - 1660158 | 51529.9 |
| hypothetical protein | DD563_08115 | Not Available | Positive | 1660190 - 1660411 | 7692.6 |
| lysr family transcriptional regulator | DD563_08120 | Not Available | Negative | 1660420 - 1661283 | 31239.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
