Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hemin abc transporter substrate-binding protein | DD563_00680 | Not Available | Positive | 139774 - 140646 | 29756.7 |
| iron abc transporter | DD563_00685 | Not Available | Positive | 140648 - 141718 | 36068.6 |
| heme abc transporter atp-binding protein | DD563_00690 | Not Available | Positive | 141715 - 142503 | 27566.4 |
| energy transducer tonb | DD563_00695 | Not Available | Negative | 142528 - 143493 | 32553.3 |
| biopolymer transporter exbd | DD563_00700 | Not Available | Negative | 143490 - 143876 | 14275.4 |
| biopolymer transporter exbd | DD563_00705 | Not Available | Negative | 143873 - 144223 | 12436.5 |
| mota/tolq/exbb proton channel family protein | DD563_00710 | Not Available | Negative | 144252 - 144863 | 21187.8 |
| hypothetical protein | DD563_00715 | Not Available | Negative | 144917 - 145348 | 14807.8 |
| type ii crispr rna-guided endonuclease cas9 | DD563_00720 | Not Available | Positive | 146587 - 149802 | 120861.0 |
| type ii crispr-associated endonuclease cas1 | DD563_00725 | Not Available | Positive | 149871 - 150782 | 32362.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
