Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tetr/acrr family transcriptional regulator | DD563_08025 | Not Available | Negative | 1644473 - 1645096 | 23091.0 |
| s-formylglutathione hydrolase | DD563_08030 | Not Available | Positive | 1645299 - 1646132 | 29948.2 |
| si-specific nad(p)(+) transhydrogenase | DD563_08035 | Not Available | Positive | 1646137 - 1647567 | 52687.0 |
| yaii/yqxd family protein | DD563_08040 | Not Available | Positive | 1647564 - 1648010 | 15623.9 |
| eama family transporter | DD563_08045 | Not Available | Positive | 1648027 - 1648989 | 34199.8 |
| haloacid dehalogenase | DD563_08050 | Not Available | Positive | 1648993 - 1649610 | 22538.9 |
| ornithine cyclodeaminase | DD563_08055 | Not Available | Positive | 1649607 - 1650518 | 33105.5 |
| alpha/beta hydrolase | DD563_08060 | Not Available | Positive | 1650515 - 1651423 | 32734.5 |
| voltage-gated sodium channel | DD563_08065 | Not Available | Negative | 1651533 - 1652345 | 29715.0 |
| coa ester lyase | DD563_08070 | Not Available | Negative | 1652560 - 1653522 | 34401.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
