Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 30s ribosomal protein s16 | DD563_07975 | Not Available | Positive | 1637713 - 1638150 | 15837.8 |
| 5,6-dimethylbenzimidazole synthase | DD563_07980 | Not Available | Positive | 1638167 - 1638796 | 23178.5 |
| 16s rrna processing protein rimm | DD563_07985 | Not Available | Positive | 1638938 - 1639453 | 17927.4 |
| trna (guanosine(37)-n1)-methyltransferase trmd | DD563_07990 | Not Available | Positive | 1639641 - 1640474 | 30055.9 |
| 50s ribosomal protein l19 | DD563_07995 | Not Available | Positive | 1640721 - 1641104 | 14025.0 |
| 50s ribosomal protein l31 | DD563_08000 | Not Available | Positive | 1641116 - 1641337 | 8145.88 |
| ssra-binding protein | DD563_08005 | Not Available | Positive | 1641524 - 1642000 | 18278.1 |
| hypothetical protein | DD563_08010 | Not Available | Positive | 1642010 - 1642264 | 8193.51 |
| 3-mercaptopyruvate sulfurtransferase | DD563_08015 | Not Available | Positive | 1642351 - 1643208 | 31326.2 |
| aromatic amino acid aminotransferase | DD563_08020 | Not Available | Positive | 1643208 - 1644392 | 42591.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
