Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| f0f1 atp synthase subunit c | DD563_07925 | Not Available | Negative | 1630679 - 1630915 | 7714.61 |
| f0f1 atp synthase subunit a | DD563_07930 | Not Available | Negative | 1631010 - 1631795 | 28301.5 |
| f0f1 atp synthase subunit i | DD563_07935 | Not Available | Negative | 1631785 - 1632162 | 14017.7 |
| arsr family transcriptional regulator | DD563_07940 | Not Available | Positive | 1632394 - 1632738 | 12542.2 |
| lysr family transcriptional regulator | DD563_07945 | Not Available | Negative | 1632759 - 1633643 | 32385.6 |
| signal recognition particle protein | DD563_07950 | Not Available | Positive | 1633949 - 1635475 | 54205.0 |
| n-acetyltransferase | DD563_07955 | Not Available | Positive | 1635606 - 1636175 | 20859.4 |
| n-acetyltransferase | DD563_07960 | Not Available | Positive | 1636172 - 1636711 | 19350.6 |
| n-acetyltransferase | DD563_07965 | Not Available | Positive | 1636712 - 1637317 | 22778.9 |
| chorismate mutase | DD563_07970 | Not Available | Positive | 1637368 - 1637664 | 11128.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
