Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DD563_07825 | Not Available | Negative | 1609825 - 1610286 | 15623.8 |
| vacj lipoprotein | DD563_07830 | Not Available | Positive | 1610564 - 1611379 | 29103.8 |
| abc transporter | DD563_07835 | Not Available | Positive | 1611369 - 1611968 | 21916.4 |
| glycosyl transferase | DD563_07840 | Not Available | Negative | 1611993 - 1614128 | 76351.9 |
| p-ii family nitrogen regulator | DD563_07845 | Not Available | Positive | 1614419 - 1614757 | 12054.8 |
| ammonium transporter | DD563_07850 | Not Available | Positive | 1614784 - 1616112 | 46525.1 |
| acyl-coa dehydrogenase | DD563_07855 | Not Available | Positive | 1616294 - 1617481 | 42027.5 |
| rhodanese-like domain-containing protein | DD563_07860 | Not Available | Negative | 1617515 - 1617889 | 13239.0 |
| dna mismatch repair endonuclease mutl | DD563_07865 | Not Available | Positive | 1617982 - 1619841 | 65830.7 |
| dna recombination protein rmuc | DD563_07870 | Not Available | Positive | 1619838 - 1621007 | 42905.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
