Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| yiha family ribosome biogenesis gtp-binding protein | DD563_07725 | Not Available | Positive | 1592490 - 1593143 | 23612.7 |
| acetylglutamate kinase | DD563_07730 | Not Available | Positive | 1593186 - 1594049 | 30017.6 |
| fatty acid hydroxylase | DD563_07735 | Not Available | Positive | 1594098 - 1594892 | 30156.1 |
| ferredoxin | DD563_07740 | Not Available | Positive | 1594889 - 1595518 | 22722.2 |
| phosphoglycerate mutase | DD563_07745 | Not Available | Positive | 1595515 - 1596009 | 17853.4 |
| abc transporter atp-binding protein | DD563_07750 | Not Available | Negative | 1596067 - 1596834 | 28875.0 |
| amino acid abc transporter permease | DD563_07755 | Not Available | Negative | 1596886 - 1598184 | 47555.8 |
| amino acid abc transporter permease | DD563_07760 | Not Available | Negative | 1598188 - 1599408 | 44116.0 |
| amino acid abc transporter substrate-binding protein | DD563_07765 | Not Available | Negative | 1599612 - 1600631 | 35488.8 |
| atpase | DD563_07770 | Not Available | Negative | 1600843 - 1601556 | 26299.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
