Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Trna-arg | Not Available | Not Available | Positive | 1583089 - 1583165 | Not Available |
| sensor histidine kinase | DD563_07680 | Not Available | Negative | 1583224 - 1584603 | 50189.1 |
| dihydrolipoamide dehydrogenase | DD563_07685 | Not Available | Negative | 1584626 - 1586044 | 50203.1 |
| hypothetical protein | DD563_07690 | Not Available | Negative | 1586047 - 1586778 | 25715.1 |
| 50s ribosomal protein l34 | DD563_07695 | Not Available | Positive | 1587078 - 1587212 | 5125.44 |
| ribonuclease p protein component | DD563_07700 | Not Available | Positive | 1587239 - 1587658 | 15316.7 |
| membrane protein insertion efficiency factor yidd | DD563_07705 | Not Available | Positive | 1587655 - 1587876 | 8149.99 |
| trna 2-thiocytidine(32) synthetase ttca | DD563_07710 | Not Available | Positive | 1587941 - 1588801 | 32358.1 |
| diguanylate cyclase | DD563_07715 | Not Available | Positive | 1588962 - 1590431 | 53490.7 |
| membrane protein insertase yidc | DD563_07720 | Not Available | Positive | 1590640 - 1592442 | 66496.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
