Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DD563_07575 | Not Available | Negative | 1563354 - 1563644 | 9735.74 |
| molybdenum cofactor biosynthesis protein moae | DD563_07580 | Not Available | Negative | 1563649 - 1564095 | 16332.4 |
| molybdopterin converting factor subunit 1 | DD563_07585 | Not Available | Negative | 1564098 - 1564343 | 8755.3 |
| cdp-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | DD563_07590 | Not Available | Negative | 1564340 - 1565008 | 24803.9 |
| excinuclease abc subunit c | DD563_07595 | Not Available | Negative | 1565064 - 1566938 | 69063.3 |
| short chain dehydrogenase | DD563_07600 | Not Available | Negative | 1567230 - 1568006 | 27260.9 |
| sodium:proton exchanger | DD563_07605 | Not Available | Negative | 1568021 - 1568968 | 33213.5 |
| s49 family peptidase | DD563_07610 | Not Available | Negative | 1569149 - 1569964 | 29369.5 |
| sugar abc transporter permease | DD563_07615 | Not Available | Negative | 1570083 - 1570844 | 27939.2 |
| multidrug abc transporter atp-binding protein | DD563_07620 | Not Available | Negative | 1570841 - 1571770 | 33468.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
