Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| deoxyribodipyrimidine photolyase | DD563_00630 | Not Available | Positive | 127399 - 128820 | 53516.2 |
| sam-dependent methyltransferase | DD563_00635 | Not Available | Positive | 128906 - 130120 | 45962.4 |
| tellurium resistance protein | DD563_00640 | Not Available | Positive | 130169 - 130609 | 15902.5 |
| tellurium resistance protein | DD563_00645 | Not Available | Positive | 130616 - 131731 | 40155.1 |
| cysteine synthase a | DD563_00650 | Not Available | Positive | 131788 - 132819 | 36337.6 |
| duf3772 domain-containing protein | DD563_00655 | Not Available | Positive | 132816 - 135290 | 89437.5 |
| ala-trna(pro) hydrolase | DD563_00660 | Not Available | Positive | 135287 - 136006 | 25855.2 |
| Trna-ser | Not Available | Not Available | Positive | 136086 - 136175 | Not Available |
| ligand-gated channel | DD563_00670 | Not Available | Negative | 136438 - 138426 | 71536.8 |
| hemin-degrading factor | DD563_00675 | Not Available | Positive | 138665 - 139741 | 39393.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
