Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| heat shock protein hspq | DD563_07525 | Not Available | Negative | 1552323 - 1552649 | 12561.6 |
| transporter | DD563_07530 | Not Available | Positive | 1552735 - 1553616 | 30851.0 |
| lytic transglycosylase | DD563_07535 | Not Available | Positive | 1553688 - 1554275 | 21989.1 |
| cell envelope biogenesis protein lola | DD563_07540 | Not Available | Negative | 1554294 - 1554899 | 21407.4 |
| dna translocase ftsk | DD563_07545 | Not Available | Negative | 1555037 - 1558018 | 106219.0 |
| aspartate aminotransferase | DD563_07550 | Not Available | Negative | 1558033 - 1559208 | 42622.1 |
| amidase | DD563_07555 | Not Available | Negative | 1559367 - 1560695 | 45694.7 |
| 2-octaprenyl-6-methoxyphenyl hydroxylase | DD563_07560 | Not Available | Positive | 1560793 - 1562007 | 43032.8 |
| hypothetical protein | DD563_07565 | Not Available | Negative | 1562166 - 1562645 | 16197.8 |
| hypothetical protein | DD563_07570 | Not Available | Negative | 1562694 - 1563269 | 19938.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
