Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| serine/threonine protein kinase | DD563_07475 | Not Available | Positive | 1540444 - 1541487 | 38643.1 |
| rna pseudouridine synthase | DD563_07480 | Not Available | Negative | 1541506 - 1542150 | 23875.2 |
| fad-dependent oxidoreductase | DD563_07485 | Not Available | Negative | 1542309 - 1544756 | 89277.2 |
| homocysteine s-methyltransferase | DD563_07490 | Not Available | Negative | 1544796 - 1545692 | 31439.6 |
| dimethylglycine dehydrogenase | DD563_07495 | Not Available | Negative | 1545800 - 1548244 | 90389.9 |
| xre family transcriptional regulator | DD563_07500 | Not Available | Negative | 1548298 - 1548870 | 20578.4 |
| diguanylate cyclase | DD563_07505 | Not Available | Negative | 1548965 - 1549417 | 16201.3 |
| anti-sigma factor antagonist | DD563_07510 | Not Available | Positive | 1549534 - 1549872 | 11710.1 |
| atp-binding protein | DD563_07515 | Not Available | Positive | 1549893 - 1550372 | 17361.6 |
| gamma-glutamyltransferase | DD563_07520 | Not Available | Positive | 1550696 - 1552270 | 54545.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
