Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| heme biosynthesis protein hemy | DD563_07425 | Not Available | Negative | 1530867 - 1532360 | 54053.0 |
| hypothetical protein | DD563_07430 | Not Available | Negative | 1532379 - 1533665 | 43190.0 |
| uroporphyrinogen-iii synthase | DD563_07435 | Not Available | Negative | 1533674 - 1534402 | 25086.6 |
| trna (adenosine(37)-n6)-threonylcarbamoyltransferase complex transferase subunit tsad | DD563_07440 | Not Available | Positive | 1534475 - 1535554 | 36881.7 |
| glycerol-3-phosphate dehydrogenase | DD563_07445 | Not Available | Positive | 1535551 - 1536513 | 32823.9 |
| hypothetical protein | DD563_07450 | Not Available | Positive | 1536507 - 1536776 | 9305.27 |
| eve domain-containing protein | DD563_07455 | Not Available | Positive | 1536782 - 1537204 | 15661.6 |
| hypothetical protein | DD563_07460 | Not Available | Positive | 1537306 - 1537776 | 18401.0 |
| peroxidase | DD563_07465 | Not Available | Negative | 1538048 - 1538704 | 23992.6 |
| aldehyde dehydrogenase family protein | DD563_07470 | Not Available | Positive | 1538869 - 1540311 | 50571.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
