Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| uroporphyrinogen-iii c-methyltransferase | DD563_07170 | Not Available | Negative | 1480566 - 1481432 | 30319.6 |
| phytoene synthase | DD563_07175 | Not Available | Negative | 1481629 - 1482426 | 28153.1 |
| citramalate synthase | DD563_07180 | Not Available | Negative | 1482392 - 1484002 | 57711.6 |
| cysteine--trna ligase | DD563_07185 | Not Available | Negative | 1484160 - 1485605 | 53958.8 |
| aspartate aminotransferase | DD563_07190 | Not Available | Positive | 1485846 - 1487024 | 41395.0 |
| methyltransferase | DD563_07195 | Not Available | Positive | 1487252 - 1488790 | 55032.1 |
| 3-phosphoshikimate 1-carboxyvinyltransferase | DD563_07200 | Not Available | Negative | 1488867 - 1490210 | 46673.2 |
| hypothetical protein | DD563_07205 | Not Available | Negative | 1490248 - 1490604 | 12920.4 |
| acyltransferase | DD563_07210 | Not Available | Negative | 1490606 - 1491505 | 33106.3 |
| hpr family phosphocarrier protein | DD563_07215 | Not Available | Negative | 1491544 - 1491822 | 9467.34 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
