Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DD563_07120 | Not Available | Positive | 1471693 - 1471881 | 7013.73 |
| excinuclease abc subunit uvrb | DD563_07125 | Not Available | Positive | 1471862 - 1474060 | 81868.4 |
| hypothetical protein | DD563_07130 | Not Available | Positive | 1474061 - 1474492 | 14924.9 |
| hypothetical protein | DD563_07135 | Not Available | Negative | 1474552 - 1474818 | 10113.0 |
| cobalt-precorrin-5b (c(1))-methyltransferase | DD563_07140 | Not Available | Positive | 1474960 - 1476006 | 36255.9 |
| cobalt-precorrin-6a reductase | DD563_07145 | Not Available | Positive | 1476003 - 1476734 | 25563.9 |
| 3-methyladenine dna glycosylase | DD563_07150 | Not Available | Positive | 1476731 - 1477360 | 22667.2 |
| phospholipase | DD563_07155 | Not Available | Positive | 1477357 - 1478025 | 23558.1 |
| mfs transporter | DD563_07160 | Not Available | Negative | 1478022 - 1479242 | 42246.9 |
| cobyrinic acid a,c-diamide synthase | DD563_07165 | Not Available | Negative | 1479283 - 1480569 | 44642.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
