Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cysteine methyltransferase | DD563_07065 | Not Available | Negative | 1460794 - 1461213 | 14240.9 |
| tryptophan synthase subunit alpha | DD563_07070 | Not Available | Negative | 1461255 - 1462046 | 27309.7 |
| hypothetical protein | DD563_07075 | Not Available | Positive | 1462234 - 1462560 | 11109.1 |
| hypothetical protein | DD563_07080 | Not Available | Positive | 1462600 - 1463061 | 15740.8 |
| redox-regulated atpase ychf | DD563_07085 | Not Available | Positive | 1463138 - 1464235 | 39029.5 |
| oxidoreductase | DD563_07095 | Not Available | Negative | 1464993 - 1466960 | 68683.5 |
| type i secretion protein | DD563_07100 | Not Available | Positive | 1468094 - 1470403 | 79329.2 |
| hypothetical protein | DD563_07105 | Not Available | Positive | 1470460 - 1470639 | 6737.78 |
| Trna-thr | Not Available | Not Available | Positive | 1470726 - 1470801 | Not Available |
| hypothetical protein | DD563_07115 | Not Available | Negative | 1470847 - 1471722 | 32723.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
