Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DD563_07015 | Not Available | Positive | 1451670 - 1451870 | 7182.63 |
| antibiotic biosynthesis monooxygenase | DD563_07020 | Not Available | Negative | 1451939 - 1452250 | 11524.6 |
| hypothetical protein | DD563_07025 | Not Available | Negative | 1452485 - 1452841 | 12795.0 |
| 50s ribosomal protein l11 methyltransferase | DD563_07030 | Not Available | Negative | 1452923 - 1453813 | 31257.3 |
| mfs transporter | DD563_07035 | Not Available | Negative | 1453836 - 1455068 | 45479.1 |
| primosomal protein n' | DD563_07040 | Not Available | Negative | 1455162 - 1457360 | 79317.1 |
| fructose-6-phosphate aldolase | DD563_07045 | Not Available | Positive | 1457453 - 1458106 | 23265.3 |
| duf484 domain-containing protein | DD563_07050 | Not Available | Positive | 1458444 - 1459148 | 26282.5 |
| recombinase xerc | DD563_07055 | Not Available | Positive | 1459145 - 1460059 | 32685.6 |
| phosphatidylcholine synthase | DD563_07060 | Not Available | Positive | 1460096 - 1460797 | 25806.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
