Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| energy transducer tonb | DD563_06965 | Not Available | Negative | 1443113 - 1444228 | 38527.5 |
| protein tolr | DD563_06970 | Not Available | Negative | 1444240 - 1444740 | 17394.0 |
| protein tolq | DD563_06975 | Not Available | Negative | 1444744 - 1445439 | 25069.1 |
| tol-pal system-associated acyl-coa thioesterase | DD563_06980 | Not Available | Negative | 1445557 - 1445943 | 14734.8 |
| abc transporter substrate-binding protein | DD563_06985 | Not Available | Negative | 1446118 - 1447131 | 36932.0 |
| peptidoglycan-binding protein lysm | DD563_06990 | Not Available | Negative | 1447175 - 1448248 | 38878.5 |
| hypothetical protein | DD563_06995 | Not Available | Negative | 1448382 - 1449011 | 23139.9 |
| holliday junction branch migration dna helicase ruvb | DD563_07000 | Not Available | Negative | 1449063 - 1450091 | 37568.4 |
| holliday junction branch migration protein ruva | DD563_07005 | Not Available | Negative | 1450141 - 1450806 | 22659.4 |
| crossover junction endodeoxyribonuclease ruvc | DD563_07010 | Not Available | Negative | 1450803 - 1451300 | 17443.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
