Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| bcr/cfla family drug resistance efflux transporter | DD563_00570 | Not Available | Negative | 115136 - 116344 | 42208.0 |
| diguanylate cyclase | DD563_00575 | Not Available | Negative | 116415 - 118133 | 63355.8 |
| glutathione s-transferase | DD563_00580 | Not Available | Negative | 118238 - 118933 | 24910.3 |
| ribose 5-phosphate isomerase a | DD563_00585 | Not Available | Positive | 119261 - 120049 | 28397.2 |
| glutathione-disulfide reductase | DD563_00590 | Not Available | Positive | 120129 - 121484 | 48419.9 |
| ftsh protease activity modulator hflk | DD563_00595 | Not Available | Positive | 121566 - 122714 | 40935.2 |
| protease modulator hflc | DD563_00600 | Not Available | Positive | 122716 - 123585 | 32400.6 |
| duf2065 domain-containing protein | DD563_00605 | Not Available | Positive | 123585 - 123782 | 6889.13 |
| serine protease | DD563_00610 | Not Available | Positive | 123943 - 125412 | 51275.0 |
| nitrogen fixation protein nifs | DD563_00625 | Not Available | Positive | 126128 - 127348 | 44018.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
