Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| efflux rnd transporter periplasmic adaptor subunit | DD563_06815 | Not Available | Negative | 1414168 - 1415259 | 38618.4 |
| nadh:ubiquinone oxidoreductase complex i intermediate-associated protein 30 | DD563_06820 | Not Available | Positive | 1415422 - 1415889 | 16964.2 |
| ubiquinol-cytochrome c reductase | DD563_06825 | Not Available | Positive | 1415914 - 1417239 | 48450.9 |
| oxidoreductase | DD563_06830 | Not Available | Negative | 1417244 - 1418113 | 30198.9 |
| d-glycerate dehydrogenase | DD563_06835 | Not Available | Negative | 1418135 - 1419094 | 33837.4 |
| hypothetical protein | DD563_06840 | Not Available | Negative | 1419091 - 1419285 | 6893.77 |
| glutamyl-trna amidotransferase | DD563_06845 | Not Available | Negative | 1419302 - 1420642 | 47080.9 |
| c4-dicarboxylate abc transporter | DD563_06850 | Not Available | Negative | 1420639 - 1422006 | 49991.9 |
| trap transporter permease dctq | DD563_06855 | Not Available | Negative | 1422037 - 1422627 | 22405.6 |
| c4-dicarboxylate abc transporter | DD563_06860 | Not Available | Negative | 1422737 - 1423831 | 40110.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
