Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| selenium-binding protein | DD563_06615 | Not Available | Positive | 1374997 - 1376397 | 52017.3 |
| hypothetical protein | DD563_06620 | Not Available | Positive | 1376401 - 1377069 | 23616.9 |
| Trna-leu | Not Available | Not Available | Positive | 1377219 - 1377302 | Not Available |
| hypothetical protein | DD563_06630 | Not Available | Positive | 1377481 - 1377954 | 16815.4 |
| hypothetical protein | DD563_06635 | Not Available | Negative | 1378008 - 1378310 | 10534.9 |
| p-ii family nitrogen regulator | DD563_06640 | Not Available | Positive | 1378489 - 1378827 | 12169.7 |
| type i glutamate--ammonia ligase | DD563_06645 | Not Available | Positive | 1378895 - 1380301 | 52083.4 |
| hypothetical protein | DD563_06650 | Not Available | Negative | 1380431 - 1380796 | 12313.5 |
| osmotically inducible protein c | DD563_06655 | Not Available | Positive | 1381058 - 1382269 | 42253.2 |
| adenylosuccinate lyase | DD563_06660 | Not Available | Positive | 1382423 - 1383733 | 48593.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
