Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ribonuclease t | DD563_06560 | Not Available | Positive | 1364930 - 1365574 | 23283.9 |
| hypothetical protein | DD563_06565 | Not Available | Negative | 1365564 - 1366145 | 20190.6 |
| hypothetical protein | DD563_06570 | Not Available | Negative | 1366127 - 1367227 | 38853.4 |
| nad(p)h-quinone oxidoreductase | DD563_06575 | Not Available | Negative | 1367232 - 1368215 | 34297.5 |
| coq9 family protein | DD563_06580 | Not Available | Negative | 1368246 - 1368935 | 25005.7 |
| 30s ribosomal protein s21 | DD563_06585 | Not Available | Positive | 1369044 - 1369250 | 8075.01 |
| hypothetical protein | DD563_06590 | Not Available | Positive | 1369424 - 1370089 | 24720.5 |
| succinylglutamate desuccinylase | DD563_06595 | Not Available | Negative | 1370097 - 1371131 | 36757.6 |
| hlyd family type i secretion periplasmic adaptor subunit | DD563_06600 | Not Available | Negative | 1371179 - 1372480 | 48354.6 |
| type i secretion system permease/atpase | DD563_06605 | Not Available | Negative | 1372477 - 1374201 | 61338.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
