Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DD563_06510 | Not Available | Positive | 1354915 - 1355196 | 10371.3 |
| homoserine dehydrogenase | DD563_06515 | Not Available | Positive | 1355295 - 1356581 | 44773.6 |
| class ii fructose-bisphosphatase | DD563_06520 | Not Available | Positive | 1356737 - 1357702 | 34290.4 |
| single-stranded-dna-specific exonuclease recj | DD563_06525 | Not Available | Positive | 1357750 - 1359495 | 60817.3 |
| Trna-glu | Not Available | Not Available | Positive | 1359586 - 1359660 | Not Available |
| hypothetical protein | DD563_06535 | Not Available | Positive | 1359755 - 1360852 | 41679.8 |
| dna polymerase iii subunit gamma/tau | DD563_06540 | Not Available | Positive | 1361181 - 1362971 | 63570.1 |
| 30s ribosomal protein s21 | DD563_06545 | Not Available | Positive | 1363026 - 1363370 | 12316.0 |
| recombination protein recr | DD563_06550 | Not Available | Positive | 1363418 - 1364011 | 21032.7 |
| duf1013 domain-containing protein | DD563_06555 | Not Available | Negative | 1364071 - 1364817 | 27160.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
