Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| metal abc transporter permease | DD563_00520 | Not Available | Positive | 101704 - 103518 | 66136.3 |
| acriflavine resistance protein b | DD563_00525 | Not Available | Negative | 103522 - 107385 | 138781.0 |
| efflux rnd transporter periplasmic adaptor subunit | DD563_00530 | Not Available | Negative | 107382 - 108614 | 42963.8 |
| hypothetical protein | DD563_00535 | Not Available | Positive | 108824 - 109528 | 24902.4 |
| quinoprotein | DD563_00540 | Not Available | Positive | 109598 - 110923 | 45920.2 |
| ribosome biogenesis gtpase der | DD563_00545 | Not Available | Positive | 110998 - 112452 | 53623.9 |
| hypothetical protein | DD563_00550 | Not Available | Negative | 112492 - 113187 | 24378.5 |
| hypothetical protein | DD563_00555 | Not Available | Positive | 113186 - 113569 | 14117.8 |
| hypothetical protein | DD563_00560 | Not Available | Positive | 113523 - 113747 | 8152.94 |
| serine--trna ligase | DD563_00565 | Not Available | Negative | 113744 - 115039 | 46933.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
