Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lactoylglutathione lyase | DD563_06355 | Not Available | Positive | 1323582 - 1324010 | 16042.9 |
| hypothetical protein | DD563_06360 | Not Available | Positive | 1323977 - 1324699 | 25842.7 |
| hypothetical protein | DD563_06365 | Not Available | Positive | 1324711 - 1325421 | 24968.7 |
| marr family transcriptional regulator | DD563_06370 | Not Available | Negative | 1325453 - 1325947 | 18793.7 |
| succinate dehydrogenase assembly factor 2 | DD563_06375 | Not Available | Negative | 1326055 - 1326339 | 10621.6 |
| transcriptional regulator | DD563_06380 | Not Available | Negative | 1326332 - 1326733 | 14420.8 |
| aspartate transaminase | DD563_06385 | Not Available | Positive | 1326820 - 1328022 | 42941.3 |
| hypothetical protein | DD563_06390 | Not Available | Positive | 1328072 - 1328479 | 15723.7 |
| mate family efflux transporter | DD563_06395 | Not Available | Negative | 1328531 - 1329892 | 48581.6 |
| etc complex i subunit | DD563_06400 | Not Available | Negative | 1330107 - 1330418 | 11733.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
