Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| uracil phosphoribosyltransferase | DD563_06305 | Not Available | Negative | 1313230 - 1313862 | 23049.6 |
| nadp-dependent malic enzyme | DD563_06310 | Not Available | Positive | 1314031 - 1316310 | 81476.0 |
| propionyl-coa synthetase | DD563_06315 | Not Available | Positive | 1316397 - 1318286 | 68442.0 |
| csbd family protein | DD563_06320 | Not Available | Negative | 1318329 - 1318526 | 7523.74 |
| nad kinase | DD563_06325 | Not Available | Negative | 1318624 - 1319385 | 27194.6 |
| serine hydroxymethyltransferase | DD563_06330 | Not Available | Positive | 1319560 - 1320864 | 46289.2 |
| hypothetical protein | DD563_06335 | Not Available | Negative | 1320918 - 1321289 | 13013.4 |
| alpha/beta hydrolase | DD563_06340 | Not Available | Positive | 1321388 - 1322146 | 27827.8 |
| dihydrofolate reductase | DD563_06345 | Not Available | Negative | 1322143 - 1322622 | 17271.7 |
| thymidylate synthase | DD563_06350 | Not Available | Negative | 1322622 - 1323455 | 30648.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
