Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| acyl-coa dehydrogenase | DD563_06255 | Not Available | Positive | 1301587 - 1303362 | 63926.7 |
| hypothetical protein | DD563_06260 | Not Available | Positive | 1303379 - 1303591 | 8432.96 |
| glutathione s-transferase | DD563_06265 | Not Available | Positive | 1303656 - 1304291 | 23444.9 |
| acetyl-coa c-acetyltransferase | DD563_06270 | Not Available | Positive | 1304331 - 1305542 | 42528.1 |
| hypothetical protein | DD563_06275 | Not Available | Positive | 1305748 - 1305927 | 6921.38 |
| 3-hydroxyacyl-coa dehydrogenase | DD563_06280 | Not Available | Positive | 1305924 - 1308119 | 77655.2 |
| type ii secretory pathway, pullulanase pula | DD563_06285 | Not Available | Negative | 1308271 - 1308915 | 24184.7 |
| acyl-coa synthetase | DD563_06290 | Not Available | Positive | 1309035 - 1310663 | 59571.4 |
| hypothetical protein | DD563_06295 | Not Available | Positive | 1310761 - 1311783 | 36158.4 |
| hypothetical protein | DD563_06300 | Not Available | Negative | 1311853 - 1313163 | 46993.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
