Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf159 family protein | DD563_06205 | Not Available | Negative | 1293212 - 1293814 | 21586.0 |
| class i sam-dependent methyltransferase | DD563_06210 | Not Available | Negative | 1293819 - 1295012 | 42447.9 |
| duf952 domain-containing protein | DD563_06215 | Not Available | Positive | 1295203 - 1295541 | 12109.5 |
| dihydroorotate dehydrogenase (quinone) | DD563_06220 | Not Available | Positive | 1295538 - 1296596 | 37051.7 |
| hypothetical protein | DD563_06225 | Not Available | Positive | 1296593 - 1298209 | 57801.0 |
| mate family efflux transporter | DD563_06230 | Not Available | Negative | 1298206 - 1299525 | 46925.8 |
| thioesterase | DD563_06235 | Not Available | Negative | 1299518 - 1300027 | 18781.7 |
| thioesterase | DD563_06240 | Not Available | Negative | 1300031 - 1300453 | 14552.4 |
| merr family transcriptional regulator | DD563_06245 | Not Available | Positive | 1300623 - 1300994 | 14356.4 |
| merr family transcriptional regulator | DD563_06250 | Not Available | Positive | 1301118 - 1301519 | 15742.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
