Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cupin domain-containing protein | DD563_06155 | Not Available | Positive | 1284574 - 1284909 | 12338.6 |
| nad(p)-dependent oxidoreductase | DD563_06160 | Not Available | Positive | 1284961 - 1286334 | 48736.4 |
| protein ecsc | DD563_06165 | Not Available | Negative | 1286321 - 1287085 | 26511.1 |
| gnat family n-acetyltransferase | DD563_06170 | Not Available | Negative | 1287117 - 1287602 | 17469.0 |
| flavin reductase | DD563_06175 | Not Available | Positive | 1287700 - 1288284 | 21472.5 |
| transporter | DD563_06180 | Not Available | Negative | 1288301 - 1289218 | 31088.9 |
| sodium-independent anion transporter | DD563_06185 | Not Available | Negative | 1289249 - 1290922 | 58682.3 |
| s-methyl-5'-thioadenosine phosphorylase | DD563_06190 | Not Available | Positive | 1291114 - 1291995 | 31164.1 |
| lysine transporter lyse | DD563_06195 | Not Available | Positive | 1292008 - 1292640 | 21932.5 |
| adenine phosphoribosyltransferase | DD563_06200 | Not Available | Positive | 1292663 - 1293202 | 19160.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
