Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| iron abc transporter permease | DD563_06105 | Not Available | Negative | 1274305 - 1275936 | 57907.1 |
| molybdenum abc transporter atp-binding protein | DD563_06110 | Not Available | Negative | 1276186 - 1277271 | 37841.3 |
| molybdate abc transporter permease subunit | DD563_06115 | Not Available | Negative | 1277268 - 1277951 | 23823.2 |
| molybdate abc transporter substrate-binding protein | DD563_06120 | Not Available | Negative | 1277951 - 1278676 | 24814.7 |
| nudix hydrolase | DD563_06125 | Not Available | Positive | 1278821 - 1279297 | 18119.3 |
| duf1178 domain-containing protein | DD563_06130 | Not Available | Positive | 1279368 - 1279781 | 14848.6 |
| short-chain dehydrogenase | DD563_06135 | Not Available | Positive | 1279802 - 1280440 | 22280.3 |
| ribonuclease h family protein | DD563_06140 | Not Available | Positive | 1280444 - 1280848 | 14310.3 |
| aspartate kinase | DD563_06145 | Not Available | Positive | 1280923 - 1282161 | 44171.8 |
| phosphoenolpyruvate--protein phosphotransferase | DD563_06150 | Not Available | Positive | 1282311 - 1284554 | 82243.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
