Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 3-hydroxybutyrate dehydrogenase | DD563_06055 | Not Available | Negative | 1266374 - 1267174 | 27219.9 |
| acetyl-coa carboxylase biotin carboxyl carrier protein | DD563_06060 | Not Available | Positive | 1267408 - 1267902 | 16948.2 |
| acetyl-coa carboxylase biotin carboxylase subunit | DD563_06065 | Not Available | Positive | 1267913 - 1269262 | 48467.1 |
| leucyl/phenylalanyl-trna--protein transferase | DD563_06070 | Not Available | Positive | 1269281 - 1269931 | 23948.5 |
| duf2155 domain-containing protein | DD563_06075 | Not Available | Negative | 1269895 - 1270248 | 12539.1 |
| outer membrane lipid asymmetry maintenance protein mlad | DD563_06080 | Not Available | Negative | 1270248 - 1270706 | 15410.1 |
| nadh:ubiquinone oxidoreductase subunit ndufa12 | DD563_06085 | Not Available | Negative | 1270711 - 1271094 | 14829.3 |
| atp-dependent clp protease atp-binding subunit clpx | DD563_06090 | Not Available | Negative | 1271259 - 1272524 | 45821.8 |
| atp-dependent clp protease proteolytic subunit | DD563_06095 | Not Available | Negative | 1272651 - 1273286 | 23448.2 |
| hypothetical protein | DD563_06100 | Not Available | Positive | 1273751 - 1274161 | 14627.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
