Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| branched-chain amino acid abc transporter permease | DD563_06005 | Not Available | Positive | 1256779 - 1257975 | 43044.8 |
| abc transporter atp-binding protein | DD563_06010 | Not Available | Positive | 1257988 - 1258743 | 27514.3 |
| abc transporter atp-binding protein | DD563_06015 | Not Available | Positive | 1258834 - 1259589 | 27772.4 |
| acetate--coa ligase | DD563_06020 | Not Available | Positive | 1259722 - 1261668 | 70951.8 |
| hypothetical protein | DD563_06025 | Not Available | Positive | 1261970 - 1262812 | 29299.2 |
| eama/rhat family transporter | DD563_06030 | Not Available | Positive | 1262935 - 1263960 | 37288.7 |
| nadph-dependent 7-cyano-7-deazaguanine reductase quef | DD563_06035 | Not Available | Negative | 1264004 - 1264468 | 17287.7 |
| 7-carboxy-7-deazaguanine synthase quee | DD563_06040 | Not Available | Negative | 1264490 - 1265209 | 25840.8 |
| 6-carboxytetrahydropterin synthase qued | DD563_06045 | Not Available | Negative | 1265206 - 1265562 | 13827.2 |
| 7-cyano-7-deazaguanine synthase quec | DD563_06050 | Not Available | Negative | 1265562 - 1266272 | 24840.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
