Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DD563_05955 | Not Available | Positive | 1246769 - 1246984 | 7563.69 |
| hypothetical protein | DD563_05960 | Not Available | Negative | 1246981 - 1247163 | 6376.55 |
| mbl fold metallo-hydrolase | DD563_05965 | Not Available | Positive | 1247272 - 1248135 | 31443.1 |
| flagellar motor switch protein flim | DD563_05970 | Not Available | Negative | 1248139 - 1249176 | 36718.5 |
| sodium:solute symporter | DD563_05975 | Not Available | Negative | 1249270 - 1251951 | 96197.5 |
| hypothetical protein | DD563_05980 | Not Available | Negative | 1251951 - 1252235 | 10238.5 |
| two-component system response regulator | DD563_05985 | Not Available | Negative | 1252232 - 1252600 | 13499.4 |
| transcriptional regulator | DD563_05990 | Not Available | Negative | 1252706 - 1254013 | 46115.6 |
| branched-chain amino acid abc transporter substrate-binding protein | DD563_05995 | Not Available | Positive | 1254230 - 1255600 | 48415.6 |
| branched-chain amino acid abc transporter permease | DD563_06000 | Not Available | Positive | 1255744 - 1256775 | 37014.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
