Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| c-type cytochrome biogenesis protein ccmi | DD563_00470 | Not Available | Negative | 90972 - 92207 | 44833.8 |
| sarcosine oxidase subunit beta | DD563_00475 | Not Available | Positive | 92421 - 93665 | 44751.8 |
| hypothetical protein | DD563_00480 | Not Available | Positive | 93668 - 94192 | 19907.4 |
| sarcosine oxidase subunit delta | DD563_00485 | Not Available | Positive | 94194 - 94523 | 12490.6 |
| sarcosine oxidase subunit alpha family protein | DD563_00490 | Not Available | Positive | 94585 - 97599 | 108183.0 |
| sarcosine oxidase subunit gamma | DD563_00495 | Not Available | Positive | 97592 - 98158 | 20179.5 |
| superoxide dismutase | DD563_00500 | Not Available | Positive | 98261 - 98860 | 22160.6 |
| eama family transporter rard | DD563_00505 | Not Available | Positive | 98968 - 99921 | 33586.0 |
| tigr00730 family rossman fold protein | DD563_00510 | Not Available | Negative | 99861 - 100412 | 19703.9 |
| peptidoglycan-binding protein | DD563_00515 | Not Available | Positive | 100535 - 101590 | 36197.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
