Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| acyl carrier protein | DD563_05905 | Not Available | Negative | 1239881 - 1240114 | 8391.7 |
| 3-oxoacyl-[acyl-carrier-protein] reductase | DD563_05910 | Not Available | Negative | 1240324 - 1241061 | 25015.4 |
| [acyl-carrier-protein] s-malonyltransferase | DD563_05915 | Not Available | Negative | 1241142 - 1242083 | 32035.4 |
| cytochrome | DD563_05920 | Not Available | Positive | 1242267 - 1243475 | 42200.7 |
| hypothetical protein | DD563_05925 | Not Available | Negative | 1243538 - 1244110 | 20532.1 |
| hypothetical protein | DD563_05930 | Not Available | Negative | 1244255 - 1244698 | 15739.3 |
| 30s ribosomal protein s6 | DD563_05935 | Not Available | Positive | 1245031 - 1245384 | 13621.3 |
| 30s ribosomal protein s18 | DD563_05940 | Not Available | Positive | 1245412 - 1245639 | 8708.86 |
| 50s ribosomal protein l9 | DD563_05945 | Not Available | Positive | 1245652 - 1246284 | 22596.2 |
| hypothetical protein | DD563_05950 | Not Available | Negative | 1246375 - 1246635 | 9954.83 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
