Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Trna-phe | Not Available | Not Available | Positive | 1231132 - 1231206 | Not Available |
| dna gyrase inhibitor yacg | DD563_05860 | Not Available | Negative | 1231285 - 1231479 | 7043.14 |
| ribonuclease g | DD563_05865 | Not Available | Negative | 1231476 - 1232498 | 35938.1 |
| septum formation protein maf | DD563_05870 | Not Available | Negative | 1232518 - 1233084 | 20057.6 |
| translation initiation factor if-1 | DD563_05875 | Not Available | Negative | 1233115 - 1233333 | 8286.14 |
| amidohydrolase | DD563_05880 | Not Available | Negative | 1233463 - 1234347 | 31114.1 |
| abc transporter | DD563_05885 | Not Available | Negative | 1234456 - 1236252 | 63740.9 |
| endolytic transglycosylase mltg | DD563_05890 | Not Available | Negative | 1236348 - 1237508 | 41924.4 |
| beta-ketoacyl-[acyl-carrier-protein] synthase ii | DD563_05895 | Not Available | Negative | 1237508 - 1238767 | 43759.2 |
| 1-(5-phosphoribosyl)-5-((5- phosphoribosylamino)methylideneamino)imidazole-4- carboxamide isomerase | DD563_05900 | Not Available | Negative | 1238893 - 1239636 | 26602.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
