Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| branched-chain amino acid abc transporter permease | DD563_05745 | Not Available | Negative | 1209564 - 1210445 | 30317.2 |
| abc transporter atp-binding protein | DD563_05750 | Not Available | Negative | 1210455 - 1211168 | 24189.5 |
| abc transporter substrate-binding protein | DD563_05755 | Not Available | Negative | 1211180 - 1212331 | 40161.2 |
| abc transporter | DD563_05760 | Not Available | Negative | 1212328 - 1214241 | 66416.9 |
| cysteine hydrolase | DD563_05765 | Not Available | Negative | 1214238 - 1214900 | 24264.9 |
| rpir family transcriptional regulator | DD563_05770 | Not Available | Positive | 1215096 - 1215944 | 32077.8 |
| glutamine synthetase | DD563_05775 | Not Available | Positive | 1215941 - 1217251 | 46758.5 |
| acetamidase | DD563_05780 | Not Available | Positive | 1217271 - 1218254 | 35584.8 |
| transporter | DD563_05785 | Not Available | Negative | 1218266 - 1219147 | 31432.7 |
| long-chain-fatty-acid--coa ligase | DD563_05790 | Not Available | Negative | 1219153 - 1220877 | 62364.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
