Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| spermidine/putrescine abc transporter atp-binding protein | DD563_05645 | Not Available | Positive | 1186918 - 1187958 | 37100.0 |
| abc transporter permease | DD563_05650 | Not Available | Positive | 1187958 - 1188929 | 35474.1 |
| spermidine/putrescine abc transporter permease potc | DD563_05655 | Not Available | Positive | 1188922 - 1189728 | 29540.9 |
| putrescine/spermidine abc transporter substrate-binding protein | DD563_05660 | Not Available | Positive | 1189790 - 1190803 | 37999.9 |
| 6-aminohexanoate hydrolase | DD563_05665 | Not Available | Positive | 1190956 - 1192113 | 41723.4 |
| hypothetical protein | DD563_05670 | Not Available | Positive | 1192190 - 1192513 | 10489.0 |
| hypothetical protein | DD563_05675 | Not Available | Positive | 1192583 - 1193059 | 16883.0 |
| hemin uptake protein hemp | DD563_05680 | Not Available | Positive | 1193217 - 1193378 | 5704.0 |
| duf1289 domain-containing protein | DD563_05685 | Not Available | Positive | 1193398 - 1193664 | 10036.6 |
| dna starvation/stationary phase protection protein | DD563_05690 | Not Available | Negative | 1193740 - 1194210 | 16762.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
