Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| outer membrane protein assembly factor bamd | DD563_05495 | Not Available | Negative | 1153506 - 1154378 | 32948.4 |
| udp-3-o-[3-hydroxymyristoyl] n-acetylglucosamine deacetylase | DD563_05500 | Not Available | Negative | 1154577 - 1155515 | 33287.0 |
| cell division protein ftsz | DD563_05505 | Not Available | Negative | 1155746 - 1157410 | 58687.1 |
| cell division protein ftsa | DD563_05510 | Not Available | Negative | 1157698 - 1159032 | 47925.3 |
| cell division protein ftsq | DD563_05515 | Not Available | Negative | 1159029 - 1159904 | 32635.9 |
| d-alanine--d-alanine ligase | DD563_05520 | Not Available | Negative | 1159892 - 1160812 | 33277.7 |
| udp-n-acetylenolpyruvoylglucosamine reductase | DD563_05525 | Not Available | Negative | 1160877 - 1161830 | 33357.8 |
| hypothetical protein | DD563_05530 | Not Available | Negative | 1161864 - 1162139 | 9852.55 |
| udp-n-acetylmuramate--l-alanine ligase | DD563_05535 | Not Available | Negative | 1162136 - 1163545 | 50143.1 |
| udp-n-acetylglucosamine--n-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol n-acetylglucosamine transferase | DD563_05540 | Not Available | Negative | 1163542 - 1164642 | 38094.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
