Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| oxidoreductase | DD563_05440 | Not Available | Negative | 1142591 - 1143577 | 34202.3 |
| dimethylsulfoniopropionate demethylase | DD563_05445 | Not Available | Negative | 1143631 - 1144737 | 40808.7 |
| hypothetical protein | DD563_05450 | Not Available | Negative | 1144804 - 1145511 | 25471.6 |
| hypothetical protein | DD563_05455 | Not Available | Negative | 1145515 - 1146234 | 25827.0 |
| fadr family transcriptional regulator | DD563_05460 | Not Available | Positive | 1146387 - 1147118 | 26435.6 |
| duf2842 domain-containing protein | DD563_05465 | Not Available | Negative | 1147215 - 1147463 | 9017.44 |
| adenylosuccinate synthase | DD563_05470 | Not Available | Negative | 1147485 - 1148780 | 46481.6 |
| preprotein translocase subunit secg | DD563_05480 | Not Available | Positive | 1149429 - 1149785 | 11645.2 |
| ctp synthetase | DD563_05485 | Not Available | Positive | 1149968 - 1151611 | 60553.2 |
| dna repair protein recn | DD563_05490 | Not Available | Negative | 1151806 - 1153455 | 57957.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
