Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DD563_00420 | Not Available | Positive | 81983 - 82513 | 20418.1 |
| hypothetical protein | DD563_00425 | Not Available | Positive | 82523 - 84079 | 59685.5 |
| tigr02391 family protein | DD563_00430 | Not Available | Negative | 84239 - 84991 | 28305.6 |
| hypothetical protein | DD563_00435 | Not Available | Positive | 85203 - 85502 | 11516.3 |
| integrase | DD563_00440 | Not Available | Negative | 86266 - 87426 | 44143.0 |
| trna dihydrouridine(20/20a) synthase dusa | DD563_00445 | Not Available | Positive | 87538 - 88563 | 36480.2 |
| hypothetical protein | DD563_00450 | Not Available | Positive | 88615 - 89439 | 28231.9 |
| hypothetical protein | DD563_00455 | Not Available | Positive | 89433 - 90215 | 28323.7 |
| duf1289 domain-containing protein | DD563_00460 | Not Available | Negative | 90234 - 90476 | 9077.06 |
| holliday junction resolvase ruvx | DD563_00465 | Not Available | Negative | 90499 - 90975 | 17122.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
