Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 6,7-dimethyl-8-ribityllumazine synthase | DD563_05390 | Not Available | Negative | 1131051 - 1131593 | 18789.6 |
| 3,4-dihydroxy-2-butanone-4-phosphate synthase | DD563_05395 | Not Available | Negative | 1131598 - 1132731 | 40434.6 |
| udp-n-acetylmuramoyl-l-alanine--d-glutamate ligase | DD563_05400 | Not Available | Negative | 1132773 - 1134182 | 48962.1 |
| phospho-n-acetylmuramoyl-pentapeptide- transferase | DD563_05405 | Not Available | Negative | 1134229 - 1135350 | 40160.2 |
| udp-n-acetylmuramoyl-tripeptide--d-alanyl-d- alanine ligase | DD563_05410 | Not Available | Negative | 1135351 - 1136793 | 50468.5 |
| udp-n-acetylmuramoyl-l-alanyl-d-glutamate--2, 6-diaminopimelate ligase | DD563_05415 | Not Available | Negative | 1136790 - 1138271 | 51441.1 |
| cell division protein ftsi | DD563_05420 | Not Available | Negative | 1138293 - 1140080 | 64252.5 |
| cell division protein ftsl | DD563_05425 | Not Available | Negative | 1140077 - 1140430 | 13537.0 |
| 16s rrna (cytosine(1402)-n(4))-methyltransferase | DD563_05430 | Not Available | Negative | 1140430 - 1141410 | 34405.2 |
| transcriptional regulator mraz | DD563_05435 | Not Available | Negative | 1141414 - 1141917 | 18933.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
