Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rna-binding protein s4 | DD563_05290 | Not Available | Negative | 1113445 - 1113876 | 15804.8 |
| disulfide oxidoreductase | DD563_05295 | Not Available | Negative | 1113873 - 1116794 | 106040.0 |
| hypothetical protein | DD563_05300 | Not Available | Negative | 1116835 - 1117347 | 18624.1 |
| sterol carrier family protein | DD563_05305 | Not Available | Positive | 1117467 - 1117757 | 9821.49 |
| alpha/beta hydrolase | DD563_05310 | Not Available | Positive | 1117760 - 1118743 | 35633.8 |
| 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase | DD563_05315 | Not Available | Negative | 1118697 - 1119527 | 29283.1 |
| ligase-associated dna damage response exonuclease | DD563_05320 | Not Available | Positive | 1119604 - 1120614 | 36805.5 |
| atp-dependent dna ligase | DD563_05325 | Not Available | Positive | 1120611 - 1122203 | 59584.2 |
| oligoendopeptidase f | DD563_05330 | Not Available | Positive | 1122297 - 1124117 | 68057.6 |
| dksa/trar family c4-type zinc finger protein | DD563_05335 | Not Available | Negative | 1124290 - 1124559 | 9516.24 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
