Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DD563_05240 | Not Available | Positive | 1102550 - 1103542 | 38205.6 |
| hypothetical protein | DD563_05245 | Not Available | Positive | 1103530 - 1103904 | 12680.3 |
| bifunctional o-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase | DD563_05250 | Not Available | Positive | 1103980 - 1105257 | 45341.8 |
| hypothetical protein | DD563_05255 | Not Available | Positive | 1105459 - 1108194 | 94809.3 |
| potassium transporter | DD563_05260 | Not Available | Positive | 1108460 - 1110358 | 68504.8 |
| nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase | DD563_05265 | Not Available | Negative | 1110365 - 1111375 | 34108.2 |
| adenosylcobinamide-gdp ribazoletransferase | DD563_05270 | Not Available | Positive | 1111454 - 1112206 | 24648.7 |
| card family transcriptional regulator | DD563_05275 | Not Available | Negative | 1112260 - 1112775 | 19099.8 |
| hypothetical protein | DD563_05280 | Not Available | Negative | 1112776 - 1112967 | 7125.99 |
| ferredoxin | DD563_05285 | Not Available | Negative | 1113055 - 1113393 | 12745.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
