Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter atp-binding protein | DD563_05190 | Not Available | Positive | 1094248 - 1095321 | 38651.5 |
| proline iminopeptidase | DD563_05195 | Not Available | Positive | 1095318 - 1096199 | 31864.7 |
| hypothetical protein | DD563_05200 | Not Available | Negative | 1096204 - 1096551 | 11609.4 |
| duf883 domain-containing protein | DD563_05205 | Not Available | Negative | 1096553 - 1096882 | 11392.3 |
| lysr family transcriptional regulator | DD563_05210 | Not Available | Negative | 1096973 - 1097884 | 33867.4 |
| lactam utilization protein lamb | DD563_05215 | Not Available | Positive | 1098075 - 1098851 | 27976.6 |
| biotin carboxyl carrier domain-containing protein | DD563_05220 | Not Available | Positive | 1098877 - 1099110 | 7971.54 |
| acetyl-coa carboxylase biotin carboxylase subunit | DD563_05225 | Not Available | Positive | 1099115 - 1100497 | 48834.4 |
| allophanate hydrolase | DD563_05230 | Not Available | Positive | 1100494 - 1101369 | 33129.3 |
| allophanate hydrolase | DD563_05235 | Not Available | Positive | 1101359 - 1102327 | 34199.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
