Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DD563_05140 | Not Available | Positive | 1083613 - 1083801 | 7373.84 |
| abc transporter permease | DD563_05145 | Not Available | Positive | 1083794 - 1084498 | 25253.7 |
| sulfate abc transporter atp-binding protein | DD563_05150 | Not Available | Positive | 1084492 - 1085208 | 25784.4 |
| sulfate abc transporter substrate-binding protein | DD563_05155 | Not Available | Positive | 1085205 - 1086008 | 28295.3 |
| coa-binding protein | DD563_05160 | Not Available | Negative | 1086026 - 1088086 | 71673.7 |
| enoyl-coa hydratase | DD563_05165 | Not Available | Positive | 1088246 - 1089052 | 28761.5 |
| acetylpolyamine amidohydrolase | DD563_05170 | Not Available | Positive | 1089074 - 1090099 | 35544.9 |
| oxidoreductase | DD563_05175 | Not Available | Positive | 1090310 - 1091119 | 28339.8 |
| abc transporter | DD563_05180 | Not Available | Positive | 1091187 - 1092143 | 35413.7 |
| abc transporter permease | DD563_05185 | Not Available | Positive | 1092257 - 1094251 | 70837.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
