Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| imidazole glycerol phosphate synthase subunit hisf | DD563_05095 | Not Available | Positive | 1074995 - 1075759 | 26225.4 |
| phosphoribosyl-atp diphosphatase | DD563_05100 | Not Available | Positive | 1075756 - 1076070 | 11321.5 |
| stress responsive protein | DD563_05105 | Not Available | Positive | 1076067 - 1076357 | 10828.1 |
| coa-binding protein | DD563_05110 | Not Available | Negative | 1076354 - 1076827 | 17251.1 |
| hypothetical protein | DD563_05115 | Not Available | Negative | 1077070 - 1077381 | 11703.4 |
| 23s rrna (guanosine(2251)-2'-o)-methyltransferase rlmb | DD563_05120 | Not Available | Negative | 1077391 - 1078185 | 28340.2 |
| Trna-pseudo | Not Available | Not Available | Positive | 1078352 - 1078435 | Not Available |
| arylmalonate decarboxylase | DD563_05125 | Not Available | Positive | 1078594 - 1079376 | 27585.2 |
| duf2309 domain-containing protein | DD563_05130 | Not Available | Negative | 1079446 - 1081845 | 85096.5 |
| oxidoreductase | DD563_05135 | Not Available | Negative | 1081867 - 1083426 | 54029.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
