Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| alpha-hydroxy-acid oxidizing enzyme | DD563_05040 | Not Available | Positive | 1064472 - 1065617 | 41822.0 |
| pyruvate carboxylase | DD563_05045 | Not Available | Positive | 1065763 - 1069209 | 126255.0 |
| phosphodiesterase | DD563_05050 | Not Available | Positive | 1069226 - 1070026 | 28481.1 |
| Trna-gly | Not Available | Not Available | Positive | 1070244 - 1070318 | Not Available |
| imidazoleglycerol-phosphate dehydratase hisb | DD563_05060 | Not Available | Positive | 1070432 - 1071019 | 21378.6 |
| imidazole glycerol phosphate synthase subunit hish | DD563_05065 | Not Available | Positive | 1071023 - 1071658 | 22946.5 |
| duf2147 domain-containing protein | DD563_05075 | Not Available | Negative | 1072595 - 1072984 | 13705.8 |
| duf2147 domain-containing protein | DD563_05080 | Not Available | Negative | 1073144 - 1073536 | 13377.0 |
| 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase | DD563_05085 | Not Available | Positive | 1073674 - 1074393 | 24645.5 |
| camphor resistance protein crcb | DD563_05090 | Not Available | Negative | 1074440 - 1074895 | 15428.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
